Package: wcvpmatch 0.0.1
wcvpmatch: Taxonomic Name Reconciliation Against the 'WCVP' Backbone
Standardizes and reconciles scientific plant names against a World Checklist of Vascular Plants ('WCVP')-style taxonomic backbone. The package parses names into taxonomic components and applies staged exact and fuzzy matching for binomial and trinomial inputs, including infraspecific rank-aware checks. It also returns accepted-name context and row-level matching flags to support reproducible, auditable preprocessing for downstream biodiversity, spatial, and trait analyses. A user-supplied backbone can be passed through 'target_df'; when the optional companion package 'wcvpdata' is installed, its default checklist can also be used.
Authors:
wcvpmatch_0.0.1.tar.gz
wcvpmatch_0.0.1.zip(r-4.7)wcvpmatch_0.0.1.zip(r-4.6)wcvpmatch_0.0.1.zip(r-4.5)
wcvpmatch_0.0.1.tgz(r-4.6-any)wcvpmatch_0.0.1.tgz(r-4.5-any)
wcvpmatch_0.0.1.tar.gz(r-4.7-any)wcvpmatch_0.0.1.tar.gz(r-4.6-any)
wcvpmatch_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
wcvpmatch/json (API)
| # Install 'wcvpmatch' in R: |
| install.packages('wcvpmatch', repos = c('https://paulesantos.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/paulesantos/wcvpmatch/issues
Pkgdown/docs site:https://paulesantos.github.io
- fia - Cleaned Master Tree Species List from FIA
Last updated from:44611849d7. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 188 | ||
| source / vignettes | OK | 202 | ||
| linux-release-x86_64 | OK | 197 | ||
| macos-release-arm64 | OK | 149 | ||
| macos-oldrel-arm64 | OK | 159 | ||
| windows-devel | OK | 148 | ||
| windows-release | OK | 131 | ||
| windows-oldrel | OK | 138 | ||
| wasm-release | OK | 136 |
Exports:build_genus_indexclassify_spnamesprefilter_target_by_genuswcvp_direct_matchwcvp_direct_match_species_within_genuswcvp_distributionwcvp_fuzzy_match_genuswcvp_fuzzy_match_species_within_genuswcvp_genus_matchwcvp_matchingwcvp_setup_infowcvp_suffix_match_species_within_genus
Dependencies:assertthatcachemclicpp11dplyrfastmapfozziejoingenericsgluelifecyclemagrittrmemoisepillarpkgconfigpurrrR6rlangstringdiststringistringrtibbletidyrtidyselectutf8vctrswithr
Resolve Names with wcvp_matching()
Rendered fromwcvp-matching.Rmdusingknitr::rmarkdownon May 31 2026.Last update: 2026-03-28
Started: 2026-03-28
Retrieve Distribution with wcvp_distribution()
Rendered fromwcvp-distribution.Rmdusingknitr::rmarkdownon May 31 2026.Last update: 2026-03-28
Started: 2026-03-28
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Build a Genus Index for Fast Prefiltering | build_genus_index |
| Classify Scientific Plant Names into Taxonomic Components | classify_spnames |
| Cleaned Master Tree Species List from FIA | fia |
| Prefilter Target Backbone by Input Genera (Exact + Fuzzy) | prefilter_target_by_genus |
| Direct Match Species & Genus Binomial or Trinomial names | wcvp_direct_match |
| Direct Match Species within Genus | wcvp_direct_match_species_within_genus |
| Retrieve WCVP Distribution by Species, Genus, or Family | wcvp_distribution |
| Fuzzy Match Genus Name | wcvp_fuzzy_match_genus |
| Fuzzy Match Species within Genus | wcvp_fuzzy_match_species_within_genus |
| Match Genus name | wcvp_genus_match |
| Match Scientific Names Against WCVP | wcvp_matching |
| Check Default Backbone Setup | wcvp_setup_info |
| Suffix Match Species within Genus | wcvp_suffix_match_species_within_genus |
