{ "_id": "6ab77d6e99f7aa8c6aa31436", "Package": "wcvpmatch", "Title": "Taxonomic Name Reconciliation Against the 'WCVP' Backbone", "Version": "0.0.3", "Authors@R": "c(\nperson(\"Paul Efren\", \"Santos Andrade\",\nemail = \"paulefrens@gmail.com\", role = c(\"aut\", \"cre\", \"cph\")))", "Author": "Paul Efren Santos Andrade [aut, cre, cph]", "Maintainer": "Paul Efren Santos Andrade ", "Description": "Standardizes and reconciles scientific plant names against\na World Checklist of Vascular Plants ('WCVP')-style taxonomic\nbackbone. The package parses names into taxonomic components\nand applies staged exact and fuzzy matching for binomial and\ntrinomial inputs, including infraspecific rank-aware checks. It\nalso returns accepted-name context and row-level matching flags\nto support reproducible, auditable preprocessing for downstream\nbiodiversity, spatial, and trait analyses. A user-supplied\nbackbone can be passed through 'target_df'; when the optional\ncompanion package 'wcvpdata' is installed, its default\nchecklist can also be used.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "LazyData": "true", "LazyDataCompression": "xz", "VignetteBuilder": "knitr", "Additional_repositories": "https://paulesantos.r-universe.dev", "Config/testthat/edition": "3", "Config/Needs/website": "pkgdown", "URL": "https://paulesantos.github.io/wcvpmatch/,\nhttps://github.com/PaulESantos/wcvpmatch", "BugReports": "https://github.com/PaulESantos/wcvpmatch/issues", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "libicu-dev xz-utils libclang-dev", "Repository": "https://paulesantos.r-universe.dev", "Date/Publication": "2026-09-26 04:29:11 UTC", "RemoteUrl": "https://github.com/PaulESantos/wcvpmatch", "RemoteRef": "HEAD", "RemoteSha": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-26 08:04:13 UTC", "User": "root" }, "_user": "paulesantos", "_type": "src", "_file": "wcvpmatch_0.0.3.tar.gz", "_fileid": "https://r2.ropensci.org/2caed52e07360ff615ea2f09eb36348a8fd4ad62b2554493e2433b2d81db64e0", "_filesize": 221096, "_sha256": "2caed52e07360ff615ea2f09eb36348a8fd4ad62b2554493e2433b2d81db64e0", "_expires": "2027-01-04T08:08:12.000Z", "_created": "2026-09-26T08:04:13.000Z", "_published": "2026-09-26T08:08:14.367Z", "_jobs": [ { "job": 108367526687, "time": 200, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10901294914" }, { "job": 108367526725, "time": 208, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10901986415" }, { "job": 108367526704, "time": 122, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10901561325" }, { "job": 108367526714, "time": 182, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10901736006" }, { "job": 108367016634, "time": 215, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10902370213" }, { "job": 108367526788, "time": 152, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10902355507" }, { "job": 108367526708, "time": 131, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10901745994" }, { "job": 108367526718, "time": 130, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10902275651" }, { "job": 108367526770, "time": 123, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10901541356" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440", "_status": "success", "_upstream": "https://github.com/PaulESantos/wcvpmatch", "_commit": { "id": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "author": "PaulESantos ", "committer": "PaulESantos ", "message": "readme\n", "time": 1790396951 }, "_maintainer": { "name": "Paul Efren Santos Andrade", "email": "paulefrens@gmail.com", "login": "paulesantos", "linkedin": "in/paulesantosandrade", "twitter": "@PaulEfrenSantos", "description": "Plant ecology and R programming.", "uuid": 16847375 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "assertthat", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "fozziejoin", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "memoise", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "stringdist", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "pkgload", "role": "Suggests" }, { "package": "rlang", "version": ">= 1.0.0", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "wcvpdata", "version": ">= 0.7.0", "role": "Suggests" } ], "_owner": "paulesantos", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-10", "n": 16 }, { "week": "2026-11", "n": 9 }, { "week": "2026-12", "n": 4 }, { "week": "2026-13", "n": 4 }, { "week": "2026-32", "n": 4 }, { "week": "2026-33", "n": 1 }, { "week": "2026-35", "n": 1 }, { "week": "2026-37", "n": 1 }, { "week": "2026-39", "n": 2 } ], "_tags": [], "_topics": [ "plant", "wcvp" ], "_stars": 5, "_contributors": [ { "user": "paulesantos", "count": 42, "uuid": 16847375 } ], "_userbio": { "uuid": 16847375, "type": "user", "name": "Paul Efren", "followers": 33, "description": "Plant ecology and R programming." }, "_downloads": { "count": 424, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/wcvpmatch" }, "_devurl": "https://github.com/paulesantos/wcvpmatch", "_pkgdown": "https://paulesantos.github.io/wcvpmatch/", "_searchresults": 15, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/wcvpmatch.html", "LICENSE" ], "_homeurl": "https://github.com/paulesantos/wcvpmatch", "_realowner": "paulesantos", "_cranurl": true, "_releases": [ { "version": "0.0.1", "date": "2026-03-23" }, { "version": "0.0.2", "date": "2026-09-09" } ], "_exports": [ "classify_spnames", "wcvp_distribution", "wcvp_matching", "wcvp_setup_info", "wcvp_synonyms" ], "_datasets": [ { "name": "fia", "title": "Cleaned Master Tree Species List from FIA", "object": "fia", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "Orig.Genus", "Orig.Species" ], "rows": 2169, "table": true, "tojson": true } ], "_help": [ { "page": "classify_spnames", "title": "Classify Scientific Plant Names into Taxonomic Components", "topics": [ "classify_spnames" ] }, { "page": "fia", "title": "Cleaned Master Tree Species List from FIA", "topics": [ "fia" ] }, { "page": "wcvp_distribution", "title": "Retrieve Tabular WCVP Distribution by Taxonomic Rank", "topics": [ "wcvp_distribution" ] }, { "page": "wcvp_matching", "title": "Match Scientific Names Against WCVP", "topics": [ "wcvp_matching" ] }, { "page": "wcvp_setup_info", "title": "Check Default Backbone Setup", "topics": [ "wcvp_setup_info" ] }, { "page": "wcvp_synonyms", "title": "Retrieve Synonyms Resolved Through the WCVP Backbone", "topics": [ "wcvp_synonyms" ] } ], "_readme": "https://github.com/PaulESantos/wcvpmatch/raw/HEAD/README.md", "_rundeps": [ "assertthat", "cachem", "cli", "cpp11", "dplyr", "fastmap", "fozziejoin", "generics", "glue", "lifecycle", "magrittr", "memoise", "pillar", "pkgconfig", "purrr", "R6", "rlang", "stringdist", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "wcvp-matching.Rmd", "filename": "wcvp-matching.html", "title": "Resolve Names with wcvp_matching()", "engine": "knitr::rmarkdown", "headings": [ "Example backbone", "Parse the input names", "Run the matching pipeline", "Read the pathway flags", "Accepted-name resolution", "Duplicate handling", "Practical notes" ], "created": "2026-03-28 23:40:32", "modified": "2026-08-09 05:12:15", "commits": 2 }, { "source": "wcvp-distribution.Rmd", "filename": "wcvp-distribution.html", "title": "Retrieve Distribution with wcvp_distribution()", "engine": "knitr::rmarkdown", "headings": [ "Example backbone", "Species-level retrieval", "One row per submitted name", "Compact table for a spatial join", "Genus-level retrieval", "Family-level retrieval", "Fallback from species to genus", "Practical notes" ], "created": "2026-03-28 23:40:32", "modified": "2026-08-09 05:12:15", "commits": 2 } ], "_score": 5.829303772831025, "_indexed": true, "_nocasepkg": "wcvpmatch", "_universes": [ "paulesantos" ], "_previous": "0.0.2", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.3", "date": "2026-09-26T08:06:51.000Z", "distro": "resolute", "commit": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "fileid": "https://r2.ropensci.org/88e88bb630bd5cccd3cbf070ce214bb72e9fa9ee8119e8dda69173b673122eaf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440" }, { "r": "4.6.1", "os": "linux", "version": "0.0.3", "date": "2026-09-26T08:06:51.000Z", "distro": "resolute", "commit": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "fileid": "https://r2.ropensci.org/7a91df76150cc877995baf56f8555ae07384299a97ad50674dc1e227785e0c64", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440" }, { "r": "4.5.3", "os": "mac", "version": "0.0.3", "date": "2026-09-26T08:06:21.000Z", "commit": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "fileid": "https://r2.ropensci.org/b18c4986b7282c0969b63b74d4f7c16b132150f1dcdba9adf82e181547524624", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440" }, { "r": "4.6.1", "os": "mac", "version": "0.0.3", "date": "2026-09-26T08:06:35.000Z", "commit": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "fileid": "https://r2.ropensci.org/089f8f06f8e5f0f893bbc8b8bb3f5b6372369bcda5904cea9c83fd6787d650ac", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.3", "date": "2026-09-26T08:06:55.000Z", "commit": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "fileid": "https://r2.ropensci.org/683bacedbb706225d12f0dc26a2155f47bfcadd4c14ecb9597f68d050881a5c7", "status": "success", "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440" }, { "r": "4.7.0", "os": "win", "version": "0.0.3", "date": "2026-09-26T08:05:28.000Z", "commit": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "fileid": "https://r2.ropensci.org/213c6ce1445806752e97d99302205f38172ab6d88d99fdf2182cc7ed8ee6df57", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440" }, { "r": "4.5.3", "os": "win", "version": "0.0.3", "date": "2026-09-26T08:05:23.000Z", "commit": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "fileid": "https://r2.ropensci.org/8c5048491c5c976f3f3451f9216a89283250aa7ae3d471f84578da4911050b2b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440" }, { "r": "4.6.1", "os": "win", "version": "0.0.3", "date": "2026-09-26T08:05:22.000Z", "commit": "0699fa1cab008a3df109eea54e9d84e9bf6a001a", "fileid": "https://r2.ropensci.org/1869af86b3f44280cc19b4653a060c0138c65f165c98eb8f3dc46a45db0a4418", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36228491440" } ] }