{
  "_id": "6ab800e199f7aa8c6aa344d6",
  "Package": "perumammals",
  "Title": "Taxonomic Backbone and Name Validation Tools for Mammals of Peru",
  "Version": "0.1.0",
  "Authors@R": "c(person(given = \"Paul E.\",\nfamily = \"Santos Andrade\",\nrole = c(\"aut\", \"cre\"),\nemail = \"paulefrens@gmail.com\",\ncomment = c(ORCID = \"0000-0002-6635-0375\")),\nperson(given = \"Fiorella N.\",\nfamily = \"Gonzales Guillen\",\nrole = \"ctb\",\nemail = \"fngonzales@uc.cl\",\ncomment = c(ORCID = \"0000-0001-5240-2464\")),\nperson(given = \"Ismael\",\nfamily = \"Silva\",\nrole = \"ctb\",\ncomment = \"Logo design\"))",
  "Description": "Provides a curated taxonomic backbone of mammal species\nrecorded in Peru, based on the checklist published by Pacheco\nand collaborators (2021) <doi:10.15381/rpb.v28i4.21019>. The\npackage includes standardized species data, occurrence records\nby ecological regions, endemic status, and tools for validating\nand matching scientific names through exact and approximate\nstring procedures. It is designed as a lightweight and reliable\nreference for ecological, environmental, biogeographical, and\nconservation workflows that require verified species\ninformation for Peruvian mammals.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/PaulESantos/perumammals,\nhttps://paulesantos.github.io/perumammals/",
  "BugReports": "https://github.com/PaulESantos/perumammals/issues",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "ByteCompile": "true",
  "Config/testthat/edition": "3",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "Config/roxygen2/version": "8.1.0",
  "Config/pak/sysreqs": "libicu-dev libx11-dev",
  "Repository": "https://paulesantos.r-universe.dev",
  "Date/Publication": "2026-09-26 14:51:39 UTC",
  "RemoteUrl": "https://github.com/PaulESantos/perumammals",
  "RemoteRef": "HEAD",
  "RemoteSha": "248954d365686d8774219a521f83bb840bd7f5d9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-26 17:25:10 UTC",
    "User": "root"
  },
  "Author": "Paul E. Santos Andrade [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6635-0375>),\nFiorella N. Gonzales Guillen [ctb] (ORCID:\n<https://orcid.org/0000-0001-5240-2464>),\nIsmael Silva [ctb] (Logo design)",
  "Maintainer": "Paul E. Santos Andrade <paulefrens@gmail.com>",
  "_user": "paulesantos",
  "_type": "src",
  "_file": "perumammals_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/3dd24ba44043a90dac3b1db3bc5dac9a0c8974e4de89b828bdcbfb43338b0fd8",
  "_filesize": 643848,
  "_sha256": "3dd24ba44043a90dac3b1db3bc5dac9a0c8974e4de89b828bdcbfb43338b0fd8",
  "_expires": "2027-01-04T17:29:03.000Z",
  "_created": "2026-09-26T17:25:10.000Z",
  "_published": "2026-09-26T17:29:05.428Z",
  "_jobs": [
    {
      "job": 108451012042,
      "time": 142,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10911203895"
    },
    {
      "job": 108451012046,
      "time": 200,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10911552626"
    },
    {
      "job": 108451012037,
      "time": 82,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10911463452"
    },
    {
      "job": 108451012064,
      "time": 79,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10911727009"
    },
    {
      "job": 108450246277,
      "time": 281,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10911941187"
    },
    {
      "job": 108451012020,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10911478503"
    },
    {
      "job": 108451012144,
      "time": 92,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10911408721"
    },
    {
      "job": 108451012105,
      "time": 88,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10911403722"
    },
    {
      "job": 108451012161,
      "time": 95,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10910909146"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313",
  "_status": "success",
  "_upstream": "https://github.com/PaulESantos/perumammals",
  "_commit": {
    "id": "248954d365686d8774219a521f83bb840bd7f5d9",
    "author": "PaulESantos <paulefrens@gmail.com>",
    "committer": "PaulESantos <paulefrens@gmail.com>",
    "message": "update to cran\n",
    "time": 1790434299
  },
  "_maintainer": {
    "name": "Paul E. Santos Andrade",
    "email": "paulefrens@gmail.com",
    "login": "paulesantos",
    "linkedin": "in/paulesantosandrade",
    "twitter": "@PaulEfrenSantos",
    "description": "Plant ecology and R programming.",
    "uuid": 16847375,
    "orcid": "0000-0002-6635-0375"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "assertthat",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "fuzzyjoin",
      "role": "Imports"
    },
    {
      "package": "progress",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "memoise",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    },
    {
      "package": "ggtext",
      "role": "Suggests"
    }
  ],
  "_owner": "paulesantos",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-50",
      "n": 41
    },
    {
      "week": "2025-51",
      "n": 1
    },
    {
      "week": "2026-08",
      "n": 2
    },
    {
      "week": "2026-09",
      "n": 2
    },
    {
      "week": "2026-39",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "paulesantos",
      "count": 49,
      "uuid": 16847375
    }
  ],
  "_userbio": {
    "uuid": 16847375,
    "type": "user",
    "name": "Paul Efren",
    "followers": 33,
    "description": "Plant ecology and R programming."
  },
  "_downloads": {
    "count": 257,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/perumammals"
  },
  "_devurl": "https://github.com/paulesantos/perumammals",
  "_pkgdown": "https://paulesantos.github.io/perumammals/",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/perumammals.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/paulesantos/perumammals",
  "_realowner": "paulesantos",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.0.1",
      "date": "2026-01-06"
    },
    {
      "version": "0.0.0.2",
      "date": "2026-02-24"
    }
  ],
  "_exports": [
    "found_in_peru",
    "get_ambiguous_matches",
    "get_common_names_peru",
    "is_endemic_peru",
    "is_peru_mammal",
    "match_quality_peru",
    "pm_backbone_info",
    "pm_by_ecoregion",
    "pm_common_names",
    "pm_ecoregion_summary",
    "pm_endemics",
    "pm_found_in_peru",
    "pm_is_endemic",
    "pm_is_mammal",
    "pm_list_ecoregions",
    "pm_list_endemic",
    "pm_list_families",
    "pm_list_genera",
    "pm_list_orders",
    "pm_match",
    "pm_match_quality",
    "pm_species",
    "validate_peru_mammals"
  ],
  "_datasets": [
    {
      "name": "peru_mammals",
      "title": "Mammal species of Peru based on Pacheco et al. (2021)",
      "object": "peru_mammals",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "pm_id",
        "order",
        "family",
        "genus",
        "species",
        "scientific_name",
        "scientific_name_full",
        "author",
        "common_name",
        "endemic",
        "ecoregions",
        "reference"
      ],
      "rows": 573,
      "table": true,
      "tojson": true
    },
    {
      "name": "peru_mammals_backbone",
      "title": "Summary information on the 'perumammals' taxonomic backbone",
      "object": "peru_mammals_backbone",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "source",
        "source_year",
        "n_species",
        "created_at"
      ],
      "rows": 1,
      "table": true,
      "tojson": true
    },
    {
      "name": "peru_mammals_ecoregions",
      "title": "Mammal species by Peruvian ecoregion",
      "object": "peru_mammals_ecoregions",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "pm_id",
        "scientific_name",
        "ecoregion_code"
      ],
      "rows": 1074,
      "table": true,
      "tojson": true
    },
    {
      "name": "peru_mammals_ecoregions_meta",
      "title": "Metadata for Peruvian mammal ecoregions",
      "object": "peru_mammals_ecoregions_meta",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "ecoregion_code",
        "ecoregion_label"
      ],
      "rows": 10,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "found_in_peru",
      "title": "Quick check: Is species found in Peru?",
      "topics": [
        "found_in_peru",
        "pm_found_in_peru"
      ]
    },
    {
      "page": "get_ambiguous_matches",
      "title": "Retrieve Ambiguous Match Information for Peru Mammals",
      "topics": [
        "get_ambiguous_matches"
      ]
    },
    {
      "page": "get_common_names_peru",
      "title": "Get taxonomic and common name information for Peru mammals",
      "topics": [
        "get_common_names_peru",
        "pm_common_names"
      ]
    },
    {
      "page": "is_endemic_peru",
      "title": "Check if species are endemic to Peru",
      "topics": [
        "is_endemic_peru",
        "pm_is_endemic"
      ]
    },
    {
      "page": "is_peru_mammal",
      "title": "Check if species are Peru mammals",
      "topics": [
        "is_peru_mammal",
        "pm_is_mammal"
      ]
    },
    {
      "page": "match_quality_peru",
      "title": "Get match quality for Peru mammal names",
      "topics": [
        "match_quality_peru",
        "pm_match_quality"
      ]
    },
    {
      "page": "peru_mammals",
      "title": "Mammal species of Peru based on Pacheco et al. (2021)",
      "topics": [
        "peru_mammals"
      ]
    },
    {
      "page": "peru_mammals_backbone",
      "title": "Summary information on the 'perumammals' taxonomic backbone",
      "topics": [
        "peru_mammals_backbone"
      ]
    },
    {
      "page": "peru_mammals_ecoregions",
      "title": "Mammal species by Peruvian ecoregion",
      "topics": [
        "peru_mammals_ecoregions"
      ]
    },
    {
      "page": "peru_mammals_ecoregions_meta",
      "title": "Metadata for Peruvian mammal ecoregions",
      "topics": [
        "peru_mammals_ecoregions_meta"
      ]
    },
    {
      "page": "pm_backbone_info",
      "title": "Display taxonomic backbone metadata for Peruvian mammals",
      "topics": [
        "pm_backbone_info"
      ]
    },
    {
      "page": "pm_by_ecoregion",
      "title": "List species by ecoregion",
      "topics": [
        "pm_by_ecoregion"
      ]
    },
    {
      "page": "pm_ecoregion_summary",
      "title": "Summary of species richness by ecoregion",
      "topics": [
        "pm_ecoregion_summary"
      ]
    },
    {
      "page": "pm_endemics",
      "title": "List endemic mammal species of Peru",
      "topics": [
        "pm_endemics"
      ]
    },
    {
      "page": "pm_list_ecoregions",
      "title": "Display ecoregion metadata for Peruvian mammals",
      "topics": [
        "pm_list_ecoregions"
      ]
    },
    {
      "page": "pm_list_endemic",
      "title": "List endemic mammal species by taxonomic order",
      "topics": [
        "pm_list_endemic"
      ]
    },
    {
      "page": "pm_list_families",
      "title": "List taxonomic families in the Peruvian mammal backbone",
      "topics": [
        "pm_list_families"
      ]
    },
    {
      "page": "pm_list_genera",
      "title": "List genera in the Peruvian mammal backbone",
      "topics": [
        "pm_list_genera"
      ]
    },
    {
      "page": "pm_list_orders",
      "title": "List taxonomic orders in the Peruvian mammal backbone",
      "topics": [
        "pm_list_orders"
      ]
    },
    {
      "page": "pm_species",
      "title": "Filter mammal species from the Peruvian backbone",
      "topics": [
        "pm_species"
      ]
    },
    {
      "page": "validate_peru_mammals",
      "title": "Match Species Names Against Peru Mammals Database",
      "topics": [
        "pm_match",
        "validate_peru_mammals"
      ]
    }
  ],
  "_readme": "https://github.com/PaulESantos/perumammals/raw/HEAD/README.md",
  "_rundeps": [
    "assertthat",
    "bit",
    "bit64",
    "cachem",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "dplyr",
    "fastmap",
    "fuzzyjoin",
    "generics",
    "geosphere",
    "glue",
    "hms",
    "lifecycle",
    "magrittr",
    "memoise",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "Rcpp",
    "readr",
    "rlang",
    "stringdist",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "vroom",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "vignette.Rmd",
      "filename": "vignette.html",
      "title": "Exploring Mammal Diversity in Peru with perumammals",
      "author": "Paul Efren Santos Andrade",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Dataset Background",
        "Loading the Dataset",
        "Taxonomic Diversity",
        "Orders and Species Richness",
        "Endemic Species",
        "Geographic Distribution",
        "Ecoregional Diversity",
        "Name Validation and Fuzzy Matching",
        "Practical Applications",
        "Conservation Assessment",
        "Research Data Cleaning"
      ],
      "created": "2025-12-10 04:40:34",
      "modified": "2026-09-24 02:57:34",
      "commits": 7
    },
    {
      "source": "getting_started.Rmd",
      "filename": "getting_started.html",
      "title": "Getting Started with perumammals",
      "author": "Paul Efren Santos Andrade",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Loading the package",
        "Available dataset",
        "Basic name validation",
        "Quick checks with wrapper functions",
        "Check if species occur in Peru",
        "Identify endemic species",
        "Check match quality",
        "Working with data frames",
        "Exploring taxonomic families",
        "List all families",
        "Filter by family",
        "Analyzing endemic species",
        "Get endemic species list",
        "Endemic species by ecoregion",
        "Ecoregion analysis",
        "Species distribution across ecoregions",
        "Species with widest distribution",
        "Practical examples",
        "Example 1: Data cleaning workflow",
        "Example 2: Endemic species summary",
        "Example 3: Ecoregion-specific analysis",
        "Advanced: Fuzzy matching details",
        "Citation"
      ],
      "created": "2025-12-14 01:26:06",
      "modified": "2026-09-24 02:57:34",
      "commits": 3
    },
    {
      "source": "art-logo.Rmd",
      "filename": "art-logo.html",
      "title": "perumammals Package Logo",
      "author": "",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Package Logo",
        "Description",
        "Featured Species and Elements",
        "Design Elements"
      ],
      "created": "2025-12-14 17:22:17",
      "modified": "2026-09-24 02:57:34",
      "commits": 4
    }
  ],
  "_score": 4.8750612633917,
  "_indexed": true,
  "_nocasepkg": "perumammals",
  "_universes": [
    "paulesantos"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-09-26T17:27:27.000Z",
      "distro": "resolute",
      "commit": "248954d365686d8774219a521f83bb840bd7f5d9",
      "fileid": "https://r2.ropensci.org/afcb5f1c8063cb9043a4fcb8d764b3fe7a65eebf43612ba4ddcb644de9b3d9c6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-09-26T17:28:15.000Z",
      "distro": "resolute",
      "commit": "248954d365686d8774219a521f83bb840bd7f5d9",
      "fileid": "https://r2.ropensci.org/bd6ac384de055464df22909440b96ea0346a9fe115bf2062f0bfb530110738f5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-09-26T17:27:18.000Z",
      "commit": "248954d365686d8774219a521f83bb840bd7f5d9",
      "fileid": "https://r2.ropensci.org/2adca8351fc1fc53f55b2210b00520a6931f347f509336d5d5549fdae6bf270b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-09-26T17:27:22.000Z",
      "commit": "248954d365686d8774219a521f83bb840bd7f5d9",
      "fileid": "https://r2.ropensci.org/ee19eab7b57144d307148751a8570f3414a3d21f4fd0b009291d886c9b64ae9f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-09-26T17:27:21.000Z",
      "commit": "248954d365686d8774219a521f83bb840bd7f5d9",
      "fileid": "https://r2.ropensci.org/7d54b1c5767306f28eb67041aa67d39e30998e1943d866b045c794f410975657",
      "status": "success",
      "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-09-26T17:26:17.000Z",
      "commit": "248954d365686d8774219a521f83bb840bd7f5d9",
      "fileid": "https://r2.ropensci.org/e4ac6d401bd501a8ac0fc9a315b918c0899a3d6320cdc73f4c8be72a9f2af215",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-09-26T17:26:15.000Z",
      "commit": "248954d365686d8774219a521f83bb840bd7f5d9",
      "fileid": "https://r2.ropensci.org/ce1778df60059523c625868a72c59afca915ad35ab9c0160d024fec6f425c4b2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-09-26T17:26:21.000Z",
      "commit": "248954d365686d8774219a521f83bb840bd7f5d9",
      "fileid": "https://r2.ropensci.org/b9facbb229db2eb1302b1c3b908524a2c87381e70c825b3f48cb3433492b1768",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/paulesantos/actions/runs/36258677313"
    }
  ]
}